Blastclust manual

1. Introduction 2. Algorithm cd-hit clustering algorithm algorithm limitations cd-hit-2d comparing algorithm DNA/RNA clustering comparing. Blastclust is a program that is part of the NCBI-BLAST [1] standalone distribution available for download. It is designed to rapidly cluster related protein or nucleotides sequences. Blastclust utilizes single-linkage clustering algorithms, the blastp algorithm for proteins, and the . CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences. CD-HIT was originally developed by Dr. Weizhong Li at Dr. Adam Godzik's Lab at the Burnham Institute (now Sanford-Burnham Medical Research Institute). CD-HIT is very fast and can handle extremely large databases. CD-HIT helps to significantly reduce the computational .

This manual documents the BLAST (Basic Local Alignment Search Tool) command line applications developed at the National Center for Biotechnology Information (NCBI). 可直接Google中文教程。更权威，更详细的请参考BLAST手册《BLAST Command Line Applications User Manual》。具体参数信息可直接输入 blastn -help` 查阅。 提示：blast输出格式有多种，其中11包含信息最全，其它格式都可用blast_formatter程序由11转化为其它格式。所以，比对结果请. blastClust Project ID: Star 0 49 Commits; 1 Branch; 0 Tags; MB Files; MB Storage; Clustering blast hits on contigs based on their distance https.

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